Wing Commander Secret Ops is an episodic computer game and a direct sequel to Wing Commander Prophecy. Wing Commander: Secret Ops is an unprecedented episodic game release available exclusively over the internet. Secret Ops is a stand alone space combat action game with 56 new single player missions split into seven downloadable episodes.

Secret Ops continues the story of Wing Commander: Prophecy. Casey and some of his wingmates are transferred to the Confederation's newest cruiser, the TCS Cerberus. They are assigned patrol duties close to the Sol system. However, the bugs are back and this time, they are close to Earth. It's up to Casey to stop their plans once more.